Banner

GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs7216064 1 rs62085993 chr17:65923152 C17orf58 chr17:65987218-65989765:- 0.19 3.81 0.000159 Lung adenocarcinoma;Lung cancer;EGFR mutation-positive lung adenocarcinoma
THCA cis rs16958440 1 rs62096463 chr18:44628928 HDHD2 chr18:44633782-44676871:- 0.28 5.21 2.84E-7 Sitting height ratio
THCA cis rs16958440 1 rs62096463 chr18:44628928 PIAS2 chr18:44392061-44500123:- -0.16 -3.35 0.000869 Sitting height ratio
THCA cis rs16958440 1 rs62096464 chr18:44629207 HDHD2 chr18:44633782-44676871:- 0.28 5.21 2.84E-7 Sitting height ratio
THCA cis rs16958440 1 rs62096464 chr18:44629207 PIAS2 chr18:44392061-44500123:- -0.16 -3.35 0.000869 Sitting height ratio
THCA cis rs16958440 1 rs62096466 chr18:44636171 HDHD2 chr18:44633782-44676871:- 0.28 5.2 3.0E-7 Sitting height ratio
THCA cis rs16958440 1 rs62096466 chr18:44636171 PIAS2 chr18:44392061-44500123:- -0.16 -3.36 0.000832 Sitting height ratio
THCA cis rs16958440 1 rs62096468 chr18:44637566 HDHD2 chr18:44633782-44676871:- 0.26 4.9 1.34E-6 Sitting height ratio
THCA cis rs16958440 1 rs62096469 chr18:44638298 HDHD2 chr18:44633782-44676871:- 0.26 4.99 8.46E-7 Sitting height ratio
THCA cis rs16958440 1 rs62096469 chr18:44638298 PIAS2 chr18:44392061-44500123:- -0.15 -3.36 0.000847 Sitting height ratio
THCA cis rs16958440 1 rs62096470 chr18:44641466 HDHD2 chr18:44633782-44676871:- 0.26 4.99 8.46E-7 Sitting height ratio
THCA cis rs16958440 1 rs62096470 chr18:44641466 PIAS2 chr18:44392061-44500123:- -0.15 -3.36 0.000847 Sitting height ratio
THCA cis rs16958440 1 rs62096471 chr18:44643814 HDHD2 chr18:44633782-44676871:- 0.26 4.98 8.99E-7 Sitting height ratio
THCA cis rs16958440 1 rs62096471 chr18:44643814 PIAS2 chr18:44392061-44500123:- -0.15 -3.37 0.000804 Sitting height ratio
THCA cis rs16958440 1 rs62096474 chr18:44647504 HDHD2 chr18:44633782-44676871:- 0.26 4.98 8.99E-7 Sitting height ratio